mnncorrect.hpp File Reference

Batch correction with mutual nearest neighbors. More...

#include <algorithm>
#include <vector>
#include <numeric>
#include <stdexcept>
#include <cstddef>
#include "knncolle/knncolle.hpp"
#include "sanisizer/sanisizer.hpp"
#include "AutomaticOrder.hpp"
#include "restore_input_order.hpp"
#include "utils.hpp"

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Classes
struct	mnncorrect::Options< Index_, Float_, Matrix_ >
	Options for compute(). More...

Namespaces
namespace	mnncorrect
	Batch correction with mutual nearest neighbors.

Functions
template<typename Index_ , typename Float_ , class Matrix_ >
void	mnncorrect::compute (const std::size_t num_dim, const std::vector< Index_ > &num_obs, const std::vector< const Float_ * > &batches, Float_ *const output, const Options< Index_, Float_, Matrix_ > &options)
template<typename Index_ , typename Float_ , class Matrix_ >
void	mnncorrect::compute (const std::size_t num_dim, const std::vector< Index_ > &num_obs, const Float_ *const input, Float_ *const output, const Options< Index_, Float_, Matrix_ > &options)
template<typename Index_ , typename Float_ , typename Batch_ , class Matrix_ >
void	mnncorrect::compute (const std::size_t num_dim, const Index_ num_obs, const Float_ *const input, const Batch_ *const batch, Float_ *const output, const Options< Index_, Float_, Matrix_ > &options)

Detailed Description

Batch correction with mutual nearest neighbors.