aggregate_across_genes.hpp File Reference

Aggregate expression values across genes. More...

#include <algorithm>
#include <vector>
#include <unordered_set>
#include <stdexcept>
#include <cstddef>
#include "tatami/tatami.hpp"
#include "tatami_stats/tatami_stats.hpp"
#include "sanisizer/sanisizer.hpp"
#include "utils.hpp"

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Classes
struct	scran_aggregate::AggregateAcrossGenesOptions
	Options for aggregate_across_genes(). More...
struct	scran_aggregate::AggregateAcrossGenesBuffers< Sum_ >
	Buffers for aggregate_across_genes(). More...
struct	scran_aggregate::AggregateAcrossGenesResults< Sum_ >
	Results of aggregate_across_genes(). More...

Namespaces
namespace	scran_aggregate
	Aggregate single-cell expression values.

Functions
template<typename Data_ , typename Index_ , typename Gene_ , typename Weight_ , typename Sum_ >
void	scran_aggregate::aggregate_across_genes (const tatami::Matrix< Data_, Index_ > &input, const std::vector< std::tuple< std::size_t, const Gene_ *, const Weight_ * > > &gene_sets, const AggregateAcrossGenesBuffers< Sum_ > &buffers, const AggregateAcrossGenesOptions &options)
template<typename Sum_ = double, typename Data_ , typename Index_ , typename Gene_ , typename Weight_ >
AggregateAcrossGenesResults< Sum_ >	scran_aggregate::aggregate_across_genes (const tatami::Matrix< Data_, Index_ > &input, const std::vector< std::tuple< std::size_t, const Gene_ *, const Weight_ * > > &gene_sets, const AggregateAcrossGenesOptions &options)

Detailed Description

Aggregate expression values across genes.