center_size_factors.hpp File Reference

Center size factors prior to scaling normalization. More...

#include <vector>
#include <numeric>
#include <algorithm>
#include <type_traits>
#include <cstddef>
#include "tatami_stats/tatami_stats.hpp"
#include "sanitize_size_factors.hpp"
#include "utils.hpp"

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Classes
struct	scran_norm::ComputeMeanSizeFactorOptions
	Options for compute_mean_size_factor() and compute_mean_size_factor_blocked(). More...
struct	scran_norm::CenterSizeFactorsOptions
	Options for center_size_factors(). More...
struct	scran_norm::CenterSizeFactorsBlockedOptions
	Options for center_size_factors() and center_size_factors_blocked(). More...

Namespaces
namespace	scran_norm
	Scaling normalization of single-cell data.

Enumerations
enum class	scran_norm::CenterBlockMode : char { PER_BLOCK , LOWEST , CUSTOM }

Functions
template<typename SizeFactor_ >
SizeFactor_	scran_norm::compute_mean_size_factor (const std::size_t num, const SizeFactor_ *const size_factors, const ComputeMeanSizeFactorOptions &options)
template<typename SizeFactor_ , typename Block_ >
std::vector< SizeFactor_ >	scran_norm::compute_mean_size_factor_blocked (const std::size_t num, const SizeFactor_ *const size_factors, const Block_ *const block, const ComputeMeanSizeFactorOptions &options)
template<typename SizeFactor_ >
SizeFactor_	scran_norm::center_size_factors (const std::size_t num, SizeFactor_ *const size_factors, const CenterSizeFactorsOptions &options)
template<typename SizeFactor_ , typename Block_ >
std::vector< SizeFactor_ >	scran_norm::center_size_factors_blocked (const std::size_t num, SizeFactor_ *const size_factors, const Block_ *const block, const CenterSizeFactorsBlockedOptions &options)

Detailed Description

Center size factors prior to scaling normalization.