normalize_counts.hpp File Reference

Normalize and log-transform counts. More...

#include <type_traits>
#include <vector>
#include <memory>
#include <cassert>
#include "tatami/tatami.hpp"

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Classes
class	scran_norm::DelayedLogNormalizeHelper< OutputValue_, InputValue_, Index_, SizeFactors_ >
	Helper for delayed log-normalization. More...
struct	scran_norm::NormalizeCountsOptions
	Options for normalize_counts(). More...

Namespaces
namespace	scran_norm
	Scaling normalization of single-cell data.

Functions
template<typename OutputValue_ = double, typename InputValue_ , typename Index_ , class SizeFactors_ >
std::shared_ptr< tatami::Matrix< OutputValue_, Index_ > >	scran_norm::normalize_counts (std::shared_ptr< const tatami::Matrix< InputValue_, Index_ > > counts, SizeFactors_ size_factors, const NormalizeCountsOptions &options)

Detailed Description

Normalize and log-transform counts.