choose_highly_variable_genes.hpp File Reference

Choose highly variable genes for downstream analyses. More...

#include <vector>
#include <cstddef>
#include "sanisizer/sanisizer.hpp"
#include "topicks/topicks.hpp"

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Classes
struct	scran_variances::ChooseHighlyVariableGenesOptions
	Options for choose_highly_variable_genes(). More...

Namespaces
namespace	scran_variances
	Variance modelling for single-cell expression data.

Functions
template<typename Stat_ , typename Bool_ >
void	scran_variances::choose_highly_variable_genes (const std::size_t n, const Stat_ *const statistic, Bool_ *const output, const ChooseHighlyVariableGenesOptions &options)
template<typename Bool_ = char, typename Stat_ >
std::vector< Bool_ >	scran_variances::choose_highly_variable_genes (const std::size_t n, const Stat_ *const statistic, const ChooseHighlyVariableGenesOptions &options)
template<typename Index_ , typename Stat_ >
std::vector< Index_ >	scran_variances::choose_highly_variable_genes_index (const Index_ n, const Stat_ *const statistic, const ChooseHighlyVariableGenesOptions &options)

Detailed Description

Choose highly variable genes for downstream analyses.