fit_variance_trend.hpp File Reference

Fit a mean-variance trend to log-count data. More...

#include <algorithm>
#include <vector>
#include <array>
#include <cstddef>
#include "WeightedLowess/WeightedLowess.hpp"
#include "sanisizer/sanisizer.hpp"
#include "utils.hpp"

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Classes
struct	scran_variances::FitVarianceTrendOptions
	Options for fit_variance_trend(). More...
struct	scran_variances::FitVarianceTrendWorkspace< Float_ >
	Workspace for fit_variance_trend(). More...
struct	scran_variances::FitVarianceTrendResults< Float_ >
	Results of fit_variance_trend(). More...

Namespaces
namespace	scran_variances
	Variance modelling for single-cell expression data.

Functions
template<typename Float_ >
void	scran_variances::fit_variance_trend (const std::size_t n, const Float_ *const mean, const Float_ *const variance, Float_ *const fitted, Float_ *const residuals, FitVarianceTrendWorkspace< Float_ > &workspace, const FitVarianceTrendOptions &options)
template<typename Float_ >
FitVarianceTrendResults< Float_ >	scran_variances::fit_variance_trend (const std::size_t n, const Float_ *const mean, const Float_ *const variance, const FitVarianceTrendOptions &options)

Detailed Description

Fit a mean-variance trend to log-count data.