Options.hpp

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#ifndef GSDECON_OPTIONS_HPP
#define GSDECON_OPTIONS_HPP
 
#include "scran_blocks/scran_blocks.hpp"
#include "irlba/irlba.hpp"
#include "Eigen/Dense"
 
namespace gsdecon {
 
struct Options {
    Options() {
        irlba_options.cap_number = true;
    }
    int rank = 1;
 
    bool scale = false;
 
    scran_blocks::WeightPolicy block_weight_policy = scran_blocks::WeightPolicy::VARIABLE;
 
    scran_blocks::VariableWeightParameters variable_block_weight_parameters;
 
    int num_threads = 1;
 
    bool realize_matrix = true;
 
    irlba::Options<Eigen::VectorXd> irlba_options;
};
 
}
 
#endif