compute.hpp File Reference

Compute per-cell scores for a gene set. More...

#include <algorithm>
#include <numeric>
#include "tatami/tatami.hpp"
#include "irlba/irlba.hpp"
#include "scran_pca/scran_pca.hpp"
#include "Options.hpp"
#include "Results.hpp"
#include "utils.hpp"

Go to the source code of this file.

Namespaces
namespace	gsdecon
	Gene set scoring with gsdecon.

Functions
template<typename Value_ , typename Index_ , typename Float_ >
void	gsdecon::compute (const tatami::Matrix< Value_, Index_ > &matrix, const Options &options, const Buffers< Float_ > &output)
template<typename Float_ = double, typename Value_ , typename Index_ >
Results< Float_ >	gsdecon::compute (const tatami::Matrix< Value_, Index_ > &matrix, const Options &options)

Detailed Description

Compute per-cell scores for a gene set.