aggregate_across_cells.hpp File Reference

Aggregate expression values across cells. More...

#include <algorithm>
#include <vector>
#include <cstddef>
#include <type_traits>
#include "tatami/tatami.hpp"
#include "tatami_stats/tatami_stats.hpp"
#include "sanisizer/sanisizer.hpp"
#include "utils.hpp"

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Classes
struct	scran_aggregate::AggregateAcrossCellsOptions
	Options for aggregate_across_cells(). More...
struct	scran_aggregate::AggregateAcrossCellsBuffers< Sum_, Detected_ >
	Buffers for aggregate_across_cells(). More...
struct	scran_aggregate::AggregateAcrossCellsResults< Sum_, Detected_ >
	Results of aggregate_across_cells(). More...

Namespaces
namespace	scran_aggregate
	Aggregate single-cell expression values.

Functions
template<typename Data_ , typename Index_ , typename Group_ , typename Sum_ , typename Detected_ >
void	scran_aggregate::aggregate_across_cells (const tatami::Matrix< Data_, Index_ > &input, const Group_ *const group, const AggregateAcrossCellsBuffers< Sum_, Detected_ > &buffers, const AggregateAcrossCellsOptions &options)
template<typename Sum_ = double, typename Detected_ = int, typename Data_ , typename Index_ , typename Group_ >
AggregateAcrossCellsResults< Sum_, Detected_ >	scran_aggregate::aggregate_across_cells (const tatami::Matrix< Data_, Index_ > &input, const Group_ *const group, const AggregateAcrossCellsOptions &options)

Detailed Description

Aggregate expression values across cells.