score_markers_summary.hpp File Reference

Score potential markers by summaries of effect sizes between pairs of groups of cells. More...

#include "scran_blocks/scran_blocks.hpp"
#include "tatami/tatami.hpp"
#include "sanisizer/sanisizer.hpp"
#include "topicks/topicks.hpp"
#include <array>
#include <map>
#include <vector>
#include "scan_matrix.hpp"
#include "cohens_d.hpp"
#include "simple_diff.hpp"
#include "summarize_comparisons.hpp"
#include "average_group_stats.hpp"
#include "create_combinations.hpp"
#include "utils.hpp"

Go to the source code of this file.

Classes
struct	scran_markers::ScoreMarkersSummaryOptions
	Options for score_markers_summary() and friends. More...
struct	scran_markers::ScoreMarkersSummaryBuffers< Stat_, Rank_ >
	Buffers for score_markers_summary() and friends. More...
struct	scran_markers::ScoreMarkersSummaryResults< Stat_, Rank_ >
	Results for score_markers_summary() and friends. More...

Namespaces
namespace	scran_markers
	Marker detection for single-cell data.

Functions
template<typename Value_ , typename Index_ , typename Group_ , typename Stat_ , typename Rank_ >
void	scran_markers::score_markers_summary (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const ScoreMarkersSummaryOptions &options, const ScoreMarkersSummaryBuffers< Stat_, Rank_ > &output)
template<typename Value_ , typename Index_ , typename Group_ , typename Block_ , typename Stat_ , typename Rank_ >
void	scran_markers::score_markers_summary_blocked (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const Block_ *const block, const ScoreMarkersSummaryOptions &options, const ScoreMarkersSummaryBuffers< Stat_, Rank_ > &output)
template<typename Stat_ = double, typename Rank_ = int, typename Value_ , typename Index_ , typename Group_ >
ScoreMarkersSummaryResults< Stat_, Rank_ >	scran_markers::score_markers_summary (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const ScoreMarkersSummaryOptions &options)
template<typename Stat_ = double, typename Rank_ = int, typename Value_ , typename Index_ , typename Group_ , typename Block_ >
ScoreMarkersSummaryResults< Stat_, Rank_ >	scran_markers::score_markers_summary_blocked (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const Block_ *const block, const ScoreMarkersSummaryOptions &options)

Detailed Description

Score potential markers by summaries of effect sizes between pairs of groups of cells.