Options for center_spike_in_factors_blocked(). More...

#include <center_spike_in_factors.hpp>

Collaboration diagram for scran_norm::CenterSpikeInFactorsBlockedOptions:

Public Attributes
bool	ignore_invalid = true

SizeFactorDiagnostics *	endogenous_diagnostics = NULL

std::vector< SizeFactorDiagnostics * >	spike_in_diagnostics

CenterBlockMode	block_mode = CenterBlockMode::LOWEST

Detailed Description

Options for center_spike_in_factors_blocked().

Member Data Documentation

◆ ignore_invalid

bool scran_norm::CenterSpikeInFactorsBlockedOptions::ignore_invalid = true

See CenterSizeFactorsBlockedOptions::ignore_invalid.

◆ endogenous_diagnostics

SizeFactorDiagnostics* scran_norm::CenterSpikeInFactorsBlockedOptions::endogenous_diagnostics = NULL

Diagnostics of the size factors for endogenous genes, see CenterSizeFactorsBlockedOptions::diagnostics for more details.

◆ spike_in_diagnostics

std::vector<SizeFactorDiagnostics*> scran_norm::CenterSpikeInFactorsBlockedOptions::spike_in_diagnostics

Vector of diagnostics of the size factors for spike-in transcripts. This should be of the same length as the number of spike-in sets (i.e., spike_ins). Individual pointers may be NULL to omit calculation of diagnostics for each set. See CenterSizeFactorsBlockedOptions::diagnostics for more details.

◆ block_mode

CenterBlockMode scran_norm::CenterSpikeInFactorsBlockedOptions::block_mode = CenterBlockMode::LOWEST

Strategy for handling blocks, see CenterSizeFactorsBlockedOptions::block_mode for more details.

The documentation for this struct was generated from the following file: