scran_norm::CenterSpikeInFactorsOptions Struct Reference

Options for center_spike_in_factors(). More...

#include <center_spike_in_factors.hpp>

Collaboration diagram for scran_norm::CenterSpikeInFactorsOptions:

Public Attributes
bool	ignore_invalid = true
SizeFactorDiagnostics *	endogenous_diagnostics = NULL
std::vector< SizeFactorDiagnostics * >	spike_in_diagnostics

Detailed Description

Options for center_spike_in_factors().

Member Data Documentation

ignore_invalid

bool scran_norm::CenterSpikeInFactorsOptions::ignore_invalid = true

See CenterSizeFactorsOptions::ignore_invalid.

endogenous_diagnostics

SizeFactorDiagnostics* scran_norm::CenterSpikeInFactorsOptions::endogenous_diagnostics = NULL

Diagnostics of the size factors for endogenous genes, see CenterSizeFactorsOptions::diagnostics for more details.

spike_in_diagnostics

std::vector<SizeFactorDiagnostics*> scran_norm::CenterSpikeInFactorsOptions::spike_in_diagnostics

Vector of diagnostics of the size factors for spike-in transcripts. This should be of the same length as the number of spike-in sets (i.e., spike_ins). Individual pointers may be NULL to omit calculation of diagnostics for each set. See CenterSizeFactorsOptions::diagnostics for more details.

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The documentation for this struct was generated from the following file:

• scran_norm/center_spike_in_factors.hpp