choose_filter_thresholds.hpp File Reference

Define QC filter thresholds using a MAD-based approach. More...

#include <vector>
#include <limits>
#include <cmath>
#include <algorithm>
#include <cstddef>
#include <cassert>
#include "sanisizer/sanisizer.hpp"
#include "quickstats/quickstats.hpp"
#include "utils.hpp"

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Classes
struct	scran_qc::ChooseFilterThresholdsOptions
	Options for choose_filter_thresholds(). More...
struct	scran_qc::ChooseFilterThresholdsResults< Float_ >
	Results of compute_adt_qc_metrics(). More...
struct	scran_qc::ChooseFilterThresholdsBlockedWorkspace< Float_ >
	Workspace for choose_filter_thresholds_blocked(). More...

Namespaces
namespace	scran_qc
	Simple quality control for single-cell data.

Functions
template<typename Value_ , typename Float_ >
ChooseFilterThresholdsResults< Float_ >	scran_qc::choose_filter_thresholds (const std::size_t num_cells, const Value_ *const metrics, Float_ *const buffer, const ChooseFilterThresholdsOptions &options)
template<typename Float_ , typename Block_ >
void	scran_qc::reset_choose_filter_thresholds_blocked_workspace (ChooseFilterThresholdsBlockedWorkspace< Float_ > &work, const std::size_t num_cells, const Block_ *const block, const std::size_t num_blocks)
template<typename Value_ , typename Block_ , typename Float_ >
std::vector< ChooseFilterThresholdsResults< Float_ > >	scran_qc::choose_filter_thresholds_blocked (const std::size_t num_cells, const Value_ *const metrics, const Block_ *const block, const std::size_t num_blocks, ChooseFilterThresholdsBlockedWorkspace< Float_ > &workspace, const ChooseFilterThresholdsOptions &options)

Detailed Description

Define QC filter thresholds using a MAD-based approach.