per_cell_qc_metrics.hpp File Reference

Compute per-cell quality control metrics. More...

#include <vector>
#include <algorithm>
#include <limits>
#include <cstddef>
#include "tatami/tatami.hpp"
#include "tatami_stats/tatami_stats.hpp"
#include "sanisizer/sanisizer.hpp"
#include "utils.hpp"

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Classes
struct	scran_qc::PerCellQcMetricsOptions
	Options for per_cell_qc_metrics(). More...
struct	scran_qc::PerCellQcMetricsBuffers< Sum_, Detected_, Value_, Index_ >
	Buffers for per_cell_qc_metrics(). More...
struct	scran_qc::PerCellQcMetricsResults< Sum_, Detected_, Value_, Index_ >
	Result store for QC metric calculations. More...

Namespaces
namespace	scran_qc
	Simple quality control for single-cell data.

Functions
template<typename Value_ , typename Index_ , typename Subset_ , typename Sum_ , typename Detected_ >
void	scran_qc::per_cell_qc_metrics (const tatami::Matrix< Value_, Index_ > &mat, const std::vector< Subset_ > &subsets, const PerCellQcMetricsBuffers< Sum_, Detected_, Value_, Index_ > &output, const PerCellQcMetricsOptions &options)
template<typename Sum_ = double, typename Detected_ = int, typename Value_ , typename Index_ , typename Subset_ >
PerCellQcMetricsResults< Sum_, Detected_, Value_, Index_ >	scran_qc::per_cell_qc_metrics (const tatami::Matrix< Value_, Index_ > &mat, const std::vector< Subset_ > &subsets, const PerCellQcMetricsOptions &options)

Detailed Description

Compute per-cell quality control metrics.