scran_qc::ComputeAdtQcMetricsBuffers< Sum_, Detected_ > Struct Template Reference

Buffers for compute_adt_qc_metrics(). More...

#include <adt_quality_control.hpp>

Public Attributes
Sum_ *	sum
Detected_ *	detected
std::vector< Sum_ * >	subset_sum

Detailed Description

template<typename Sum_ = double, typename Detected_ = int>
struct scran_qc::ComputeAdtQcMetricsBuffers< Sum_, Detected_ >

Buffers for compute_adt_qc_metrics().

Template Parameters

Sum_	Numeric type of the sums, usually floating-point. If integer, this should be large enough to avoid overflow.
Detected_	Integer type of the number of detected cells. This should be large enough to avoid integer overflow, typically set to same type as Index_.

Note that, unlike PerCellQcMetricsBuffers, all pointers are expected to be non-NULL here.

Member Data Documentation

sum

template<typename Sum_ = double, typename Detected_ = int>

Sum_* scran_qc::ComputeAdtQcMetricsBuffers< Sum_, Detected_ >::sum

Pointer to an array of length equal to the number of cells, to store the sum of ADT counts for each cell. This is analogous to ComputeAdtQcMetricsResults::sum.

detected

template<typename Sum_ = double, typename Detected_ = int>

Detected_* scran_qc::ComputeAdtQcMetricsBuffers< Sum_, Detected_ >::detected

Pointer to an array of length equal to the number of cells, to store the number of detected ADTs for each cell. This is analogous to ComputeAdtQcMetricsResults::detected.

subset_sum

template<typename Sum_ = double, typename Detected_ = int>

std::vector<Sum_*> scran_qc::ComputeAdtQcMetricsBuffers< Sum_, Detected_ >::subset_sum

Vector of pointers of length equal to the number of feature subsets, to store the sum of counts for each ADT subset in each cell. Each entry should point to an array of length equal to the number of cells. This is analogous to ComputeAdtQcMetricsResults::subset_sum.

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The documentation for this struct was generated from the following file:

• scran_qc/adt_quality_control.hpp