scran_qc::ComputeCrisprQcMetricsBuffers< Sum_, Detected_, Value_, Index_ > Struct Template Reference

Buffers for compute_crispr_qc_metrics(). More...

#include <crispr_quality_control.hpp>

Public Attributes
Sum_ *	sum
Detected_ *	detected
Value_ *	max_value
Index_ *	max_index

Detailed Description

template<typename Sum_ = double, typename Detected_ = int, typename Value_ = double, typename Index_ = int>
struct scran_qc::ComputeCrisprQcMetricsBuffers< Sum_, Detected_, Value_, Index_ >

Buffers for compute_crispr_qc_metrics().

Template Parameters

Sum_	Numeric type of the sums, usually floating-point. If integer, this should be large enough to avoid overflow.
Detected_	Integer type of the number of detected cells. This should be large enough to avoid integer overflow, typically set to the same type as Index_.
Value_	Type of matrix value.
Index_	Type of the matrix indices.

Note that, unlike PerCellQcMetricsBuffers, all pointers are expected to be non-NULL here.

Member Data Documentation

sum

template<typename Sum_ = double, typename Detected_ = int, typename Value_ = double, typename Index_ = int>

Sum_* scran_qc::ComputeCrisprQcMetricsBuffers< Sum_, Detected_, Value_, Index_ >::sum

Pointer to an array of length equal to the number of cells, to store the sum of CRISPR counts per cell. This is analogous to ComputeCrisprQcMetricsResults::sum.

detected

template<typename Sum_ = double, typename Detected_ = int, typename Value_ = double, typename Index_ = int>

Detected_* scran_qc::ComputeCrisprQcMetricsBuffers< Sum_, Detected_, Value_, Index_ >::detected

Pointer to an array of length equal to the number of cells, to store the number of detected guides per cell. This is analogous to ComputeCrisprQcMetricsResults::detected.

max_value

template<typename Sum_ = double, typename Detected_ = int, typename Value_ = double, typename Index_ = int>

Value_* scran_qc::ComputeCrisprQcMetricsBuffers< Sum_, Detected_, Value_, Index_ >::max_value

Pointer to an array of length equal to the number of cells, to store the maximum count for each cell. This is analogous to ComputeCrisprQcMetricsResults::max_value.

max_index

template<typename Sum_ = double, typename Detected_ = int, typename Value_ = double, typename Index_ = int>

Index_* scran_qc::ComputeCrisprQcMetricsBuffers< Sum_, Detected_, Value_, Index_ >::max_index

Pointer to an array of length equal to the number of cells, to store the index of the most abundant guide for each cell. This is analogous to ComputeCrisprQcMetricsResults::max_index.

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The documentation for this struct was generated from the following file:

• scran_qc/crispr_quality_control.hpp