scran_qc::ComputeRnaQcFiltersOptions Struct Reference

Options for compute_rna_qc_filters(). More...

#include <rna_quality_control.hpp>

Public Attributes
double	detected_num_mads = 3
double	sum_num_mads = 3
double	subset_proportion_num_mads = 3

Detailed Description

Options for compute_rna_qc_filters().

Member Data Documentation

detected_num_mads

double scran_qc::ComputeRnaQcFiltersOptions::detected_num_mads = 3

Number of MADs below the median, to define the threshold for outliers in the number of detected features. This should be non-negative.

sum_num_mads

double scran_qc::ComputeRnaQcFiltersOptions::sum_num_mads = 3

Number of MADs below the median, to define the threshold for outliers in the total count per cell. This should be non-negative.

subset_proportion_num_mads

double scran_qc::ComputeRnaQcFiltersOptions::subset_proportion_num_mads = 3

Number of MADs above the median, to define the threshold for outliers in the subset proportions. This should be non-negative.

---

The documentation for this struct was generated from the following file:

• scran_qc/rna_quality_control.hpp