mumosa::Options Struct Reference

Options for compute_distance(). More...

#include <simple.hpp>

Public Attributes
int	num_neighbors = 20
int	num_threads = 1

Detailed Description

Options for compute_distance().

Member Data Documentation

num_neighbors

int mumosa::Options::num_neighbors = 20

Number of neighbors for the nearest neighbor search. Larger values improve stability at the risk of including biological heterogeneity into the distance. num_neighbors + 1 can also be interpreted as the expected minimum size of each subpopulation.

num_threads

int mumosa::Options::num_threads = 1

Number of threads to use. The parallelization mechanism is determined by knncolle::parallelize().

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The documentation for this struct was generated from the following file:

• mumosa/simple.hpp