score_markers_pairwise.hpp File Reference

Score potential markers by pairwise effect sizes between groups of cells. More...

#include <vector>
#include <cstddef>
#include "scran_blocks/scran_blocks.hpp"
#include "tatami/tatami.hpp"
#include "tatami_stats/tatami_stats.hpp"
#include "sanisizer/sanisizer.hpp"
#include "scan_matrix.hpp"
#include "average_group_stats.hpp"
#include "PrecomputedPairwiseWeights.hpp"
#include "create_combinations.hpp"
#include "cohens_d.hpp"
#include "simple_diff.hpp"
#include "utils.hpp"

Go to the source code of this file.

Classes
struct	scran_markers::ScoreMarkersPairwiseOptions
	Options for score_markers_pairwise() and friends. More...
struct	scran_markers::ScoreMarkersPairwiseBuffers< Stat_ >
	Buffers for score_markers_pairwise() and friends. More...
struct	scran_markers::ScoreMarkersPairwiseResults< Stat_ >
	Results for score_markers_pairwise() and friends. More...

Namespaces
namespace	scran_markers
	Marker detection for single-cell data.

Functions
template<typename Value_ , typename Index_ , typename Group_ , typename Stat_ >
void	scran_markers::score_markers_pairwise (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const ScoreMarkersPairwiseOptions &options, const ScoreMarkersPairwiseBuffers< Stat_ > &output)
template<typename Value_ , typename Index_ , typename Group_ , typename Block_ , typename Stat_ >
void	scran_markers::score_markers_pairwise_blocked (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const Block_ *const block, const ScoreMarkersPairwiseOptions &options, const ScoreMarkersPairwiseBuffers< Stat_ > &output)
template<typename Stat_ = double, typename Value_ , typename Index_ , typename Group_ >
ScoreMarkersPairwiseResults< Stat_ >	scran_markers::score_markers_pairwise (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const ScoreMarkersPairwiseOptions &options)
template<typename Stat_ = double, typename Value_ , typename Index_ , typename Group_ , typename Block_ >
ScoreMarkersPairwiseResults< Stat_ >	scran_markers::score_markers_pairwise_blocked (const tatami::Matrix< Value_, Index_ > &matrix, const Group_ *const group, const Block_ *const block, const ScoreMarkersPairwiseOptions &options)

Detailed Description

Score potential markers by pairwise effect sizes between groups of cells.