scran_markers::ScoreMarkersPairwiseResults< Stat_ > Struct Template Reference

Results for score_markers_pairwise() and friends. More...

#include <score_markers_pairwise.hpp>

Public Attributes
std::vector< std::vector< Stat_ > >	mean
std::vector< std::vector< Stat_ > >	detected
std::vector< Stat_ >	cohens_d
std::vector< Stat_ >	auc
std::vector< Stat_ >	delta_mean
std::vector< Stat_ >	delta_detected

Detailed Description

template<typename Stat_>
struct scran_markers::ScoreMarkersPairwiseResults< Stat_ >

Results for score_markers_pairwise() and friends.

Template Parameters

Stat_

Floating-point type of the output statistics.

Member Data Documentation

auc

template<typename Stat_ >

std::vector<Stat_> scran_markers::ScoreMarkersPairwiseResults< Stat_ >::auc

Vector of length equal to \(GN^2\), where \(G\) is the number of genes and \(N\) is the number of groups. This is a 3-dimensional array to be filled with the AUC for the comparison between each pair of groups for each gene; see ScoreMarkersPairwiseBuffers::auc for details on the layout.

Alternatively, this may be an empty vector if ScoreMarkersPairwiseOptions::compute_auc = false.

cohens_d

template<typename Stat_ >

std::vector<Stat_> scran_markers::ScoreMarkersPairwiseResults< Stat_ >::cohens_d

Vector of length equal to \(GN^2\), where \(G\) is the number of genes and \(N\) is the number of groups. This is a 3-dimensional array to be filled with the Cohen's d for the comparison between each pair of groups for each gene; see ScoreMarkersPairwiseBuffers::cohens_d for details on the layout.

Alternatively, this may be an empty vector if ScoreMarkersPairwiseOptions::compute_cohens_d = false.

delta_detected

template<typename Stat_ >

std::vector<Stat_> scran_markers::ScoreMarkersPairwiseResults< Stat_ >::delta_detected

Vector of length equal to \(GN^2\), where \(G\) is the number of genes and \(N\) is the number of groups. This is a 3-dimensional array to be filled with the difference in detected proportions for the comparison between each pair of groups for each gene; see ScoreMarkersPairwiseBuffers::cohens_d for details on the layout.

Alternatively, this may be an empty vector if ScoreMarkersPairwiseOptions::compute_delta_detected = false.

delta_mean

template<typename Stat_ >

std::vector<Stat_> scran_markers::ScoreMarkersPairwiseResults< Stat_ >::delta_mean

Vector of length equal to \(GN^2\), where \(G\) is the number of genes and \(N\) is the number of groups. This is a 3-dimensional array to be filled with the difference in means for the comparison between each pair of groups for each gene; see ScoreMarkersPairwiseBuffers::cohens_d for details on the layout.

Alternatively, this may be an empty vector if ScoreMarkersPairwiseOptions::compute_delta_mean = false.

detected

template<typename Stat_ >

std::vector<std::vector<Stat_> > scran_markers::ScoreMarkersPairwiseResults< Stat_ >::detected

Vector of length equal to the number of groups. Each inner vector corresponds to a group and contains the mean expression of each gene in that group.

Alternatively, this may be an empty vector if ScoreMarkersPairwiseOptions::compute_group_detected = false.

mean

template<typename Stat_ >

std::vector<std::vector<Stat_> > scran_markers::ScoreMarkersPairwiseResults< Stat_ >::mean

Vector of length equal to the number of groups. Each inner vector corresponds to a group and contains the mean expression of each gene in that group.

Alternatively, this may be an empty vector if ScoreMarkersPairwiseOptions::compute_group_mean = false.

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The documentation for this struct was generated from the following file:

• /github/workspace/include/scran_markers/score_markers_pairwise.hpp