Public Attributes
double	threshold = 0

int	num_threads = 1

bool	compute_cohens_d = true

bool	compute_auc = true

bool	compute_delta_mean = true

bool	compute_delta_detected = true

scran_blocks::WeightPolicy	block_weight_policy = scran_blocks::WeightPolicy::VARIABLE

scran_blocks::VariableWeightParameters	variable_block_weight_parameters

Detailed Description

Options for score_markers_pairwise() and friends.

Member Data Documentation

scran_blocks::WeightPolicy scran_markers::ScoreMarkersPairwiseOptions::block_weight_policy = scran_blocks::WeightPolicy::VARIABLE

Policy to use for weighting blocks when computing average statistics/effect sizes across blocks.

bool scran_markers::ScoreMarkersPairwiseOptions::compute_auc = true

Whether to compute the AUC. This only affects the score_markers_pairwise() overload that returns a ScoreMarkersPairwiseResults.

bool scran_markers::ScoreMarkersPairwiseOptions::compute_cohens_d = true

Whether to compute Cohen's d. This only affects the score_markers_pairwise() overload that returns a ScoreMarkersPairwiseResults.

bool scran_markers::ScoreMarkersPairwiseOptions::compute_delta_detected = true

Whether to compute the difference in the detected proportion. This only affects the score_markers_pairwise() overload that returns a ScoreMarkersPairwiseResults.

bool scran_markers::ScoreMarkersPairwiseOptions::compute_delta_mean = true

Whether to compute the difference in means. This only affects the score_markers_pairwise() overload that returns a ScoreMarkersPairwiseResults.

int scran_markers::ScoreMarkersPairwiseOptions::num_threads = 1

Number of threads to use. The parallelization scheme is determined by tatami::parallelize().

double scran_markers::ScoreMarkersPairwiseOptions::threshold = 0

Threshold on the differences in expression values, used to adjust the Cohen's D and AUC calculations. This should be non-negative.

scran_blocks::VariableWeightParameters scran_markers::ScoreMarkersPairwiseOptions::variable_block_weight_parameters

Parameters for the variable block weights. Only used when ScoreMarkersPairwiseOptions::block_weight_policy = scran_blocks::WeightPolicy::VARIABLE.

The documentation for this struct was generated from the following file: