scran_norm
Scaling normalization of single-cell data
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Here is a list of all documented variables with links to the class documentation for each member:
- b -
block_mode :
scran_norm::CenterSizeFactorsBlockedOptions
,
scran_norm::CenterSpikeInFactorsBlockedOptions
- c -
center :
scran_norm::CenterSizeFactorsOptions
custom_centers :
scran_norm::CenterSizeFactorsBlockedOptions
- d -
diagnostics :
scran_norm::CenterSizeFactorsBlockedOptions
,
scran_norm::CenterSizeFactorsOptions
,
scran_norm::ComputeMeanSizeFactorOptions
- e -
endogenous_diagnostics :
scran_norm::CenterSpikeInFactorsBlockedOptions
,
scran_norm::CenterSpikeInFactorsOptions
- h -
handle_infinite :
scran_norm::SanitizeSizeFactorsOptions
handle_nan :
scran_norm::SanitizeSizeFactorsOptions
handle_negative :
scran_norm::SanitizeSizeFactorsOptions
handle_zero :
scran_norm::SanitizeSizeFactorsOptions
has_infinite :
scran_norm::SizeFactorDiagnostics
has_nan :
scran_norm::SizeFactorDiagnostics
has_negative :
scran_norm::SizeFactorDiagnostics
has_zero :
scran_norm::SizeFactorDiagnostics
- i -
ignore_invalid :
scran_norm::CenterSizeFactorsBlockedOptions
,
scran_norm::CenterSizeFactorsOptions
,
scran_norm::CenterSpikeInFactorsBlockedOptions
,
scran_norm::CenterSpikeInFactorsOptions
,
scran_norm::ComputeMeanSizeFactorOptions
- l -
log :
scran_norm::NormalizeCountsOptions
log_base :
scran_norm::NormalizeCountsOptions
- m -
max_bias :
scran_norm::ChoosePseudoCountOptions
min_value :
scran_norm::ChoosePseudoCountOptions
- p -
preserve_sparsity :
scran_norm::NormalizeCountsOptions
pseudo_count :
scran_norm::NormalizeCountsOptions
- q -
quantile :
scran_norm::ChoosePseudoCountOptions
- r -
report_final :
scran_norm::CenterSizeFactorsBlockedOptions
,
scran_norm::CenterSizeFactorsOptions
- s -
spike_in_diagnostics :
scran_norm::CenterSpikeInFactorsBlockedOptions
,
scran_norm::CenterSpikeInFactorsOptions
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