model_gene_variances.hpp File Reference

Model the per-gene variances. More...

#include "tatami/tatami.hpp"
#include "tatami_stats/tatami_stats.hpp"
#include "scran_blocks/scran_blocks.hpp"
#include "fit_variance_trend.hpp"
#include <algorithm>
#include <vector>
#include <limits>

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Classes
struct	scran_variances::ModelGeneVariancesOptions
	Options for model_gene_variances() and friends. More...
struct	scran_variances::ModelGeneVariancesBuffers< Stat_ >
	Buffers for model_gene_variances() and friends. More...
struct	scran_variances::ModelGeneVariancesResults< Stat_ >
	Results of model_gene_variances(). More...
struct	scran_variances::ModelGeneVariancesBlockedBuffers< Stat_ >
	Buffers for model_gene_variances_blocked(). More...
struct	scran_variances::ModelGeneVariancesBlockedResults< Stat_ >
	Results of model_gene_variances_blocked(). More...

Namespaces
namespace	scran_variances
	Variance modelling for single-cell expression data.

Functions
template<typename Value_ , typename Index_ , typename Block_ , typename Stat_ >
void	scran_variances::model_gene_variances_blocked (const tatami::Matrix< Value_, Index_ > &mat, const Block_ *block, const ModelGeneVariancesBlockedBuffers< Stat_ > &buffers, const ModelGeneVariancesOptions &options)
template<typename Value_ , typename Index_ , typename Stat_ >
void	scran_variances::model_gene_variances (const tatami::Matrix< Value_, Index_ > &mat, ModelGeneVariancesBuffers< Stat_ > buffers, const ModelGeneVariancesOptions &options)
template<typename Stat_ = double, typename Value_ , typename Index_ >
ModelGeneVariancesResults< Stat_ >	scran_variances::model_gene_variances (const tatami::Matrix< Value_, Index_ > &mat, const ModelGeneVariancesOptions &options)
template<typename Stat_ = double, typename Value_ , typename Index_ , typename Block_ >
ModelGeneVariancesBlockedResults< Stat_ >	scran_variances::model_gene_variances_blocked (const tatami::Matrix< Value_, Index_ > &mat, const Block_ *block, const ModelGeneVariancesOptions &options)

Detailed Description

Model the per-gene variances.