scran_qc/scran__qc_8hpp_source.html

#ifndef SCRAN_QC_HPP

#define SCRAN_QC_HPP


#include "per_cell_qc_metrics.hpp"

#include "choose_filter_thresholds.hpp"

#include "format_filters.hpp"

#include "find_median_mad.hpp"


#include "adt_quality_control.hpp"

#include "crispr_quality_control.hpp"

#include "rna_quality_control.hpp"


namespace scran_qc {}


#endif

adt_quality_control.hpp
Simple per-cell QC metrics from an ADT count matrix.

choose_filter_thresholds.hpp
Define QC filter thresholds using a MAD-based approach.

crispr_quality_control.hpp
Simple per-cell QC metrics from a CRISPR count matrix.

find_median_mad.hpp
Compute the median and MAD from an array of values.

format_filters.hpp
Format QC filters for downstream analysis.

scran_qc
Simple quality control for single-cell data.
Definition adt_quality_control.hpp:20

per_cell_qc_metrics.hpp
Compute per-cell quality control metrics.

rna_quality_control.hpp
Simple per-cell QC metrics from an RNA count matrix.