scran_graph_cluster
Graph-based clustering of cells
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scran_graph_cluster Directory Reference

Files

 build_snn_graph.hpp
 Build a shared nearest-neighbor graph on the cells.
 
 cluster_leiden.hpp
 Wrapper around igraph's Leiden community detection algorithm.
 
 cluster_multilevel.hpp
 Wrapper around igraph's multi-level community detection algorithm.
 
 cluster_walktrap.hpp
 Wrapper around igraph's Walktrap community detection algorithm.
 
 edges_to_graph.hpp
 Convert a list of edges to a graph.
 
 scran_graph_cluster.hpp
 Graph-based clustering of single-cell data.